音乐硕士学位为36小时学位，为期两年。它为学生提供与国际公认的教师和优秀乐团一起工作时完善音乐技能的机会。音乐硕士课程非常适合已获得音乐表演和音乐教育学士学位的学生。计划安排课程，以允许佛罗里达州东北部的表演者，音乐教育者，教堂音乐家和其他音乐专业人员在继续全职工作的同时攻读学位。
UNF is home to one of the most recognized performance-based music programs in the country.With an emphasis on American Music and comprised of dedicated faculty members who are recognized artist/practitioners in their fields, UNF's Music Flagship Program offers a stimulating, yet personal atmosphere in which students can study and grow. Since its beginnings in 1972, the department's limited access status has allowed for a more personal rapport between teachers and students while upholding the highest standards of musical excellence. The countless awards and endorsements that the Department continues to receive is testament to the caliber of the UNF Music Flagship Program as one of the very best anywhere. UNF's Music Flagship Program is a fully accredited member of the National Association of Schools of Music (NASM).<br><br>The Master of Music degree is a 36 hour degree with a two year residency. It provides students the opportunity for perfection of musical skills while working with internationally recognized faculty and excellent ensembles. The program is well suited to students who have completed Bachelor degrees in Music Performance and Music Education. Classes are scheduled to allow performers, music educators, church musicians, and other music professionals in Northeast Florida to pursue the degree while maintaining full-time employment.