计算机工程硕士课程最适合希望将重点放在计算机工程（硬件）方面的学生。它可以是纯课程选项程序，也可以包含项目或论文。计算机工程硕士课程的所有学生必须事先完成以下课程（由其本科成绩单证明），必须成功通过测试才能取代或完成以下课程的开始：CSE 501N编程概念和实践以及CSE 505N数字逻辑和计算机设计简介。此选项需要30个单位的研究生学分。学生还必须遵守下面列出的一般学位要求。
The MS in Computer Engineering is best suited for students who are looking to focus more on computer engineering (hardware) aspects. It can be either a pure course option program, or it can incorporate a project or a thesis. All students in the MS in Computer Engineering program must have previously completed (as documented by their undergraduate transcript), successfully test to place out of, or complete at the start of their program, the following courses: CSE 501N Programming Concepts and Practice and CSE 505N Introduction to Digital Logic and Computer Design. This option requires 30 units of graduate credit. Students must also follow the general degree requirements listed below.